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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTTGATGTGCTGGTAGGCCTTATGGCGGAGAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaattaaaacttaaaagcacccttttttctaacttacgtttatacacctgccaaagttgaatgcttcccacaaatcatatcacttctatgttg...

Basic information

species Glycine max
transcript GLYMA13G04410.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 9
AAGAGCTTGATGTGCTGGTAGGCCTTATGGCGGAGAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaattaaaacttaaa-------agcacccttttttct--aacttacgtttatacacctgccaaagttgaatgcttcccacaaatcatatcacttctatgttg
| ||||||||| | || || || |||||||| ||||||||||| || |||||||| ||||||||||| ||||||   || |||||  ||||||| || ||||| |     |  | |  || |       || |||   ||||||  ||  ||      || |   |  ||  || |     |   || |||   | || ||  |     
AGGAGCTTGATCTTCTCGTGGGACTTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCCTCATCATGGCCACAAGgtatatattttcgatatatatatatatatagaaccaagttttcttgaagatatcacagtaaattagaaaagtttaataatctaatactaatttaaacaatttcag----

upper sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 10
AAGAGCTTGATGTGCTGGTAGGCCTTATGGCGGAGAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaattaaaacttaaaagcacccttttttctaacttacgtttatacacctgccaaagttgaatgcttcccacaaatcatatcacttctatgttg----------------------
|||| || ||    |  || || || ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |||||| |  |||  ||  | ||||| |  | || | |    |  |  |       || ||||   | || ||| |  ||  ||| |  |  || |  |||  |  |||    | |  |  |                       
AAGAACTCGACACTCAAGTGGGTCTCATGGCCGAGAAGAAGATCAAGGGTTTTGCCATCAGTGAAACAGCCTTTGTCATATTCATCATCAATGCCTCAAGgtatacacgataagataaaaggaataaagcaggttataac---cattaatata--tgaaaaactacatggcctgacactgaaaataatgatacactaatcgaaatgagcgttgaacatacag

upper sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 9
AAGAGCTTGATGTGCTGGTAGGCCTTATGGCGGAGAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaattaaaacttaaaagcacccttttttctaacttacgtttatacacctgccaaagttgaatgcttcccacaaatcatatcacttctatgttg---
||||||||||    |  || ||||| ||||| |||||||| || ||||||||||| || ||||| ||||||||||| |||||| |  |||||||  |||||||||   ||  |||   |||  | |   |    |  | |||   || |   |   |  |   ||||  |  |        |     ||    |    ||   
AAGAGCTTGACACTCATGTGGGCCTCATGGCAGAGAAGAAGATCAAGGGTTTTGCTATAAGTGAAACAGCTTTTGTCATATTCATCGTCATGGCTTCCAGgtaaacaaaacaaaa---taatggaatattaaaatagacctttaattga---attggtta---ttgaccgtatttggtgggtttggccatgcgtggaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231564|gb|BE800452.1|BE800452
EST:     TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAG                         GAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaa ... acatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
EST: gi|120534267|gb|EH262400.1|EH262400
EST:     TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAG                         GAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaa ... acatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
EST: gi|21257107|gb|BQ453995.1|BQ453995
EST:     TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAG                         GAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaa ... acatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA