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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTACgtaagtatctgcttgtggaaatataactgtagaaatacatttgtttatataatgttcttacattttccttgttcttatgctgtttttttcacag

Basic information

species Glycine max
transcript GLYMA13G00990.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 9
GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTACgtaagtat--ctgct-tgtggaaatataactg--tagaaatacatttgtttatataatgttcttacattttccttgttcttatgctgtttttttcacag
 |||||||| ||||| | || ||||||||||||||| |  |||||||| ||||| |  |||||||||||||||||| | || |  ||| |||||| |||    ||||| | || | || ||  |    |||   | || |  ||  | |||      ||||     |  || || |    | | | |||   
AGCAAATGTCGCTGTTAAAAGGGAGCTTCATACTCCCGAGTCTGATCGTTCTTGTATCCATTTGGAATTTGACATTGCTGGAAGTGGACTTACgtgagttctactgctatatgaatatttacttaatcagagggaaatattattggagaata-----acatgaatgtattttttgtatcttgtctgtcag--

upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 9
GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTACgtaagtatctgcttgtggaaatataactgtagaaatacatttgtttatataatg-ttcttacattttccttgttcttatgctgtttttttcacag----------------------------------------------------------
 || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||| ||| ||||||||||  ||  |       || | | | |  | ||    ||||        || || | |||||||        ||||  | |||| ||                                                               
AGCTAATGTGGCTGTGAGGAAGGAGCTTCATACCCCTGCATCCGATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcag