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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcattaataagctctaaaggttatctgtcactactatattgatttcactgcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacag

Basic information

species Glycine max
transcript GLYMA12G36820.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36820.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G473367_T01 (Zea mays), 5'ss of exon 5
ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat-taataagctctaaaggttatctgtcactactatattgatttcactgcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacag
  |    | |||||||| |||||||||||||| |||||||||| ||||||  | || || ||||||  |||    ||| |    |||||||||   ||  | |       |    |  | | | |    | || |  ||  | |    |      ||| | | ||     ||                           
GTTGCACTCGAACTATCATTTATGGAAGCAGTTCAAGGGTGCAGCAAAACGGTCACCTTCCAAACGTCTGTAACATGTGAAATCTGTGgtatgtagatgcagtttttctcatgactccttttttaggtatttagtccttctaatttttcccctggtgatgatttctttttcag--------------------------

upper sequence: GLYMA12G36820.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G48030.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat--taataagctctaaaggttatctgtcactactatattgatttcactgcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacag
  |||  |||| || ||||| |||||||| || ||||| ||| |||||||| |||| |||||||| ||  ||  ||||||| |||||||||||   ||  |  |||| || ||  | | | | |   |  | | || || ||| |        |  |   ||| |   |      |||||  | |   |           
GTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGgtatgtatatatttctaagatcaaagtgctttatat-gttgttgtttttatctcagtctcaagttacttattgttgttttctttcttcctttcacattcag-----------

upper sequence: GLYMA12G36820.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0064g01360.t01 (Vitis vinifera), 5'ss of exon 9
ACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcattaataagctctaaaggttatctgtcactactatattgatttcactgcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacag
  ||  |||||||||||||| |||||||| || || || ||||| |||||| | ||||||||||| | | ||| |||| | |||||||||||||| | ||         ||    | | | | | |   | ||||  |  |||    ||     |    |||||    ||     ||||  |      |||| ||   
GTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTGgtatgcttaatatctgaagtaaacaaatgtttatgattttcagattggat--actaatgct-----ttctcttctcttgtcctgtattttttttggcgcttctaata---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446060|gb|CA953183.1|CA953183
EST:     GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG                         GTGGCAGTGGTGTTCCA
genomic: GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat ... tctattacagGTGGCAGTGGTGTTCCA