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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCGCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttctttaatatcaaacaagtcaatctttcaagttgttaaccattttaagtaacttgagtttttcaaacagagatgttattttttccagcataacatacttaacattgaatttcattttcttcag

Basic information

species Glycine max
transcript GLYMA12G35510.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 10
GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCGCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgtt--gagttctttaatatcaaacaagtcaatctttcaagttgttaaccattttaagtaacttgagtttttcaaacagagatgttattttttccagcataacatacttaacattgaatttcattttcttcag
 ||||| || |  |||||||||||||| || || || || || ||||| ||||| || |||||||||||||| || || || ||||| | ||| |||||||||     |  ||| || | ||||| |  ||      |||||       ||  |    |   ||  ||     | |||| || |||  |||||  |   |                                
CGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCTGACCTTCATCCCATGAGAGTGCTTTTTATCATTCCTCGAGAAACTCCACCACAGgtttcacatattttcattttaaacatgataa------aagtt-------atactggtcactgtgctttgcctcagcaga-attttaccttttctgg-gcag-------------------------------

upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 10
GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCGCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttga------gttctttaatatcaaacaagtcaatctttcaagttgttaacc-attttaagtaacttgagtttttca--aacagagatgttattttttccagcataacatacttaacattgaatttcattttcttcag
|||||| |||||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||| || ||||| ||||| ||||| || ||||||         ||| || || ||| ||     ||| ||     |||| ||   || || | |||   ||||  || |  |   |  |  ||||| |    ||    | |   |  | | |   | |  | || | |||
GGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTCCATCCAATGAGAGTGCTTTTTATAATACCTCGAGAAAATCCGCCTCAGgtttgccaatcattccttgatgtcatacttactaattttc----ttgtcaattgatcttgaataatgagagtcatttaccagatggaaaattattctccatagttctaaaggatagatactttgtgtt-tgttgtgcag

upper sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S84_190V6.1 (Physcomitrella patens), 5'ss of exon 8
-----------------GGGAATCACTGCAATTGAGATGGCAAAGGGGGAGCCGCCACTTGCTGATCTTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttctttaata--tcaaacaagtcaatctttcaagttgttaaccattttaagtaacttgagtttttcaaacagagatgttattttttccagcataacatacttaacattgaatttcattttcttcag
                 |||||||||||| |||||||||||||| ||||| | |        |  ||| ||    ||        ||||  |    |       |||| ||  |   ||||||   | | |    || |  | | |||| |     ||  |  || |   |  |   ||   ||||||                                                             
GCAGATATATGTTCATTGGGAATCACTGCTATTGAGATGGCAAAAGGGGAACTG--------TATTCTCCAAGAGATTTTgtaagttttggtggggcagtagttgaatact--agtcgttgagacttgtgacgagtcgagtacgccaattt----ggtcat--acgaagatgtgctgctaatgttttt-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688820|gb|BF596496.1|BF596496
EST:     TTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAG                         CTAGATGATCATTTTTCTCGTCCATTGAAAGAATTTGTGTCATTGTGCTTA
genomic: TTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttct ... ttttcttcagCTAGATGATCATTTTTCTCGTCCATTGAAAGAATTTGTGTCATTGTGCTTA
EST: gi|9899540|gb|BE608508.1|BE608508
EST:     TTCACCCAATGAGAGTGCTTTTCATTATACCCGGAGAGAATCCTCCACAG                         CTAGATGATCANTTNTCTCGTCCATTGAAAGAATTTGTGTCATTGTGCTTA
genomic: TTCACCCAATGAGAGTGCTTTTCATTATACCCCGAGAGAATCCTCCACAGgttgagttct ... ttttcttcagCTAGATGATCATTTTTCTCGTCCATTGAAAGAATTTGTGTCATTGTGCTTA