1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCAGCCCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGgtaattttaattagcatttactaattgtcaatttgtcataatatcttgatgactacatgtggaaacccaagtctatgctgaataaaaatagtgtctgatt...
species | Glycine max |
transcript | GLYMA12G33820.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGC-TTAACAATCCAG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGEST: gi|209709522|gb|BW668413.1|BW668413
genomic: -GAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTC-CTCCAGgtaattttaa ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAG
EST: GAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|214007703|gb|DB986069.1|DB986069
genomic: GAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGgtaattttaa ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|151412183|gb|EV281995.1|EV281995
genomic: GAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGgtaattttaa ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGA
genomic: GAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGgtaattttaa ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGCCCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAAAATTTAAGAGCTAAATACGAAGAAACCAAGAGCTTTCTCCTCCAGgtaattttaattagcatttactaattgtcaatttgtcataatatcttgatgactacatgtggaaacccaagtctatgctgaataaaaatagtgtctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa