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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgcttcatctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatattgtgatccacatgatggcttattgtgcatgtctttgtctcag

Basic information

species Glycine max
transcript GLYMA12G31980.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgcttcatctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatattgtgatccacatgatggcttattgtgcatgtctttgtctcag
| ||||||||||| |||   ||||||||||||||||| ||||| || |||||||| || |||||||| | |||  ||||| | || |||||   |||  ||| ||   || | |||  ||||   | |       ||| |     ||||      ||||  |        |||| ||                                         
ATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCTTCTTACATTTCCCTTAATCAgtaag-atttgaactcctttgtaccgca-----tcatttatgcctcattctccatctaacttctcttacaaaatgttccag-------------------------------------

upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 9
ACTGGAAATTTGGAGAGGCCGGAAACAAGTACTTCCGCCACGCCACAGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgctt-catctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatattgtgatccacatgatg-gcttattgtgcatgtctttgtctcag
| ||||||||||| ||||| |||||||| || ||||| ||||| ||||||||| | |||||||||||||||||| |||||| |||||| ||||  ||| ||| |||  |  | |  || ||    |||  |||  |   |  |  | |||  |||| | |  |  |  |   |||||  |  ||||| |  |  | ||||| || |  |  || |  |||
ATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatt--tcataatatcctcttccactttttatggttattttgtacatgattattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20498515|gb|BQ273445.1|BQ273445
EST:     CAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAA                         GCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGGTTCTTGGTT
genomic: CAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAAATAACAAgtgagtgctt ... tttgtctcagGCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGGTTCTTGGTT