1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTATATTATGGGAGCTGAGCGTTGCAGATGGAAGTTCACAGAATTCCACAAATCATTGAGAGAACGAGGAGTTGTTCGGCCTTTTACAGGGTCTGAGGATgtaagttggattcctacttactcatcaagtacatggactgaaattaatatttcgaattgttgatggacgtttttcttggaattatatatcttgtgctgtcaagtatccatgttttaatcagtatatatttcctgaaattttcag
species | Glycine max |
transcript | GLYMA12G31170.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGAACGAGGAGTTGTTCGGCC-TTTACAGGGTCTGAGGAT ATATCGG-AAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCTEST: gi|193643926|gb|FK591197.1|FK591197
genomic: GAGAACGAGGAGTTGTTCGGCCTTTTACAGGGTCTGAGGATgtaagttgga ... aaattttcagATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCT
EST: GAGAACGAGGAGTTGTTTCGGTCCTTTTACTAGGGTTCTGAGGAT ATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCEST: gi|193666169|gb|FK611766.1|FK611766
genomic: GAGAACGAGGAGTTG-TTCGG-CCTTTTAC-AGGG-TCTGAGGATgtaagttgga ... aaattttcagATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGC
EST: GAGAACGAGGAGTTGTTCGGCCTTTTACAGGGTCTGAGGAT ATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCTEST: gi|298199040|gb|HO042403.1|HO042403
genomic: GAGAACGAGGAGTTGTTCGGCCTTTTACAGGGTCTGAGGATgtaagttgga ... aaattttcagATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCT
EST: AATCATTGAGAGAACGAGGAGTTGTACGGCCTTTTACAGGGTCTGAGGAT ATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCT
genomic: AATCATTGAGAGAACGAGGAGTTGTTCGGCCTTTTACAGGGTCTGAGGATgtaagttgga ... aaattttcagATATCGGAAAATTGGAGTTATCCACCCCTTGATGACACTTCTGATGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATATTATGGGAGCTGAGCGTTGCAGATGGAAGTTCACAGAATTCCACAAATCATTGAGAGAACGAGGAGTTGTTCGGCCTTTTACAGGGTCTGAGGATgtaagttggattcctacttactcatcaagtacatggactgaaattaatatttcgaattgttgatggacgtttttcttggaattatatatcttgtgctgtcaagtatccatgttttaatcagtatatatttcctgaaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT