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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgttatcttatagttactactcaaatcatttattatgctttctgagttcatcctaacatatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag

Basic information

species Glycine max
transcript GLYMA12G27300.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g32400.2 (Oryza sativa), 5'ss of exon 8
ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgttatcttatagttactactcaaatcatttattatgctttctgag-ttcatcctaacatatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||| ||||| || |||||||||||||| |||||||||||||| || || || || ||||| |||||     |   |||  |  | |||   |||  |  |||| ||||  ||  | |  |  | | | |  | || |                                                                 
ACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAACTCTGACGGGTACAATGAAAAGgtagctgtgc-gtttttctttaaacagtttgct--gcttactgaactttttacccaagtctgtgtcctgatgcag---------------------------------------------------------------

upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G027756_T02 (Zea mays), 5'ss of exon 5
ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgttatcttatagttactactcaaatcatttattatgctttctgagttcatcctaacatatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||| ||||| || |||||||||||||| ||||||||||||||||| ||||| || |||||||||||  |  |  | || |||   ||||   ||| ||       |||| |  |    |||    | |||  || |                                                                 
ACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGGTACAATGAGAAGgtacttgtgcatttgctaaataaatttattagtag------tgagcttttatagacaaggctgtttcaatgcag---------------------------------------------------------------

upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 9
ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgt-tatcttatagttacta---ctcaaatcatttattatgctttctgagttcatcctaac-atatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||||||||| || |||||||||||||| || |||||||| || |||||||| |||||||||||||| | ||   ||  ||||     |||  ||   ||   ||   | || |||  |     | ||| || ||| | |    | | |   |||| |||   || || | |  |       ||   | |  || | |         
ACTTTTGTAGGAACCCCATTTTGGATGGCACCAGAAGTTATTCAGAACTCAGAAGGGTATAATGAGAAGgtatctcgcctatatactgagcttcacttctcctagcttgacatgtgtgtttgtagaggctatacttgtttccttagcatat-ctaatattttttgccttctttttctgttgctgggattgttgt-catttag---------

upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 9
ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgttatcttatagttactactcaaatcatttattatgctttctgagttcatcctaacatatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| |||||||||||||| |||||||||||||| || || ||||| || || ||||| |||||||||||||| ||||  |    |        | | ||| || | |||    |||| | || | | | | | | | |     || | | | | || |     ||| ||        |  |  |   ||||  |||| |  |     
ACATTTGTAGGAACACCATTTTGGATGGCACCAGAAGTGATTCAGAACTCCGAAGGTTATAATGAGAAGgt-atctcgt--ccatctgctgtagcttttgttgttcttct--agtttacccaatcttctgtgtataccctggctttacttgttttctagccctttctaattttgtcggtttctgcttctg-gtcttttccag----

upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 9
ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgttatcttatagttactactcaaatcatttattatgctttctgagttcatcctaacatatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||||||||||||     || || | ||       ||      | ||   | || ||   | |   | | | | | |  ||  | | |   | |   |  ||   |  |||                                     
ACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAGgtatctatacagatgctctctctctctccctctgtg---tgtgtgtgtgtgcacgcttgtctatatatata-tatataattgtggggagttcaatcatattttg---------------------------------

upper sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ32910 (Selaginella moellendorffii), 5'ss of exon 8
ACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgt-tatcttatagttactactcaaatcatttattatgctttctgagttcatcctaacatatttcttttcatcctctgttcctttattgtttttgtttttatcccctaagaatcatcactctgtatcttgtttatacag
|| ||||| || ||||| || ||||||||||||||||| || ||||||||||| ||||||||||| ||||| | |  | |  |  |    |   ||||| ||  || ||  |                                                                                               
ACATTTGTCGGGACACCATTCTGGATGGCACCCGAGGTGATCCAAAATTCAGATGGATATAATGAAAAGgtatgttatgttctagcagtacggctcattcatc-tgtttcattgacag-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207838828|gb|GD810476.1|GD810476
EST:     TTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAG                         GCAGATATCTGGTCTCTGGGCATTACTGCGATTGAGATGGCAAAAGGGGAG
genomic: TTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGgttatcttat ... gtttatacagGCAGATATCTGGTCTCTGGGCATTACTGCGATTGAGATGGCAAAAGGGGAG