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GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacatttctcatccatcctccttttgatattcatcacttgccattggactttaaaatggggattaaaaagatgaaaaaatagttgtcaaaatcaa...
species | Glycine max |
transcript | GLYMA12G15470.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|16996079|gb|BM085451.1|BM085451
genomic: AGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|208272767|gb|GE066245.1|GE066245
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: TATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|254341726|gb|GR852863.1|GR852863
genomic: TATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: TTATACAGAGTTTAGATT-CCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCT-CTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|193713415|gb|FK651922.1|FK651922
genomic: TTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|207768114|gb|GD739434.1|GD739434
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: CCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|193532704|gb|FK489794.1|FK489794
genomic: CCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|208260673|gb|GE059429.1|GE059429
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|193404932|gb|FK373359.1|FK373359
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATATAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|193429319|gb|FK398495.1|FK398495
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|254322923|gb|GR835638.1|GR835638
genomic: ATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: A-TATACAGAG-TTAGA-T-CCTCAGATTAAAGCTCATCC-TGGCACAAG G-TTTCCACAAGCGAATGCCT-CTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|7685735|gb|AW756383.1|AW756383
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: GATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|208335272|gb|GE133329.1|GE133329
genomic: GATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: TATACAGAGTTTAGATTCCCTCAGATTTAAAGTCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|193451281|gb|FK417869.1|FK417869
genomic: TATACAGAGTTTAGATTCCCTCAGA-TTAAAG-CTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: CCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|193690271|gb|FK634568.1|FK634568
genomic: CCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATCGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTEST: gi|193650766|gb|FK599893.1|FK599893
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAAT-GCCTCCTGAAGCAATTGACCTTGCATCAAGGCT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|48575547|gb|CO036458.1|CO036458
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|22525206|gb|BU084017.1|BU084017
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|208274362|gb|GE072446.1|GE072446
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTEST: gi|19935688|gb|BQ080542.1|BQ080542
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
EST: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAG GTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
genomic: ATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacat ... tatgtttcagGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacatttctcatccatcctccttttgatattcatcacttgccattggactttaaaatggggattaaaaagatgaaaaaatagttgtcaaaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa