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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgagtattctgttatatatgaaatttgaataataattaagcacaacatttttaaattcaaacctaggagacatgatgagctgattgcaaagcat...

Basic information

species Glycine max
transcript GLYMA12G14060.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g24704.1 (Oryza sativa), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgagtattctgttatatatgaaatttgaataataattaagcacaacatttttaaattcaaacctaggagacatgatgagctgattgcaaagcat
 || |||||  | ||  | || |||||  | || | |||||  | |||||||||||| || || ||||||||||| ||||| |||||||||||||||||||| |  |   |    | || | | | |  |||| ||       ||    |    |||||   | | |   |    |  |  | | |   || ||      
TGGCCAAGGTTTGAAGACAGAGAATCGCATAGGAATTTTCAAAGCTGAATTTGATGTCCAGTCTACATTTGAGGGCGACAATAATGTTCTAATGCAGCAGgttattttgct----tattgtttgtcatctttgtatttctcccaaaggta----ttttatgcttagattaattttaactatttaacctttt-cag-----

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgagtattctgttatatatgaaatttga-ataataattaagcacaacatttttaaattcaaacctaggagacatgatgagctgattgcaaagcat
||| |||||  | ||  |||| || ||  | || | |||||    |||||||||||| || || ||||||||||| || |||||||| |||||||||||||| |     || ||| || ||  ||  | |||   | |     |  |       || | | | |  ||||| |   |                        
AGGTCAAGGTCTAAAGACTGAGAACCGCATAGGAATTTTCAAATCTGAATTTGATGTCCAGTCCACATTTGAGGGTGATAACAATGTGCTAATGCAGCAGgttattgttgttttcagtcatgcatccattttatcaaaggtgcttcgtgtgtggttgtaacaatttaaccttgtttag-----------------------

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgagtattctgttatatatgaaatttgaataataattaagcacaacatttttaaattcaaacctaggagacatgatgagctgattgcaaagcat--
||| ||||| || ||| | |||||||  |||||  | || |  |||||||||||||||||  | ||||||||||| ||||| |||||  | |||||||||||||   |   ||| |        ||  ||||| || || | ||  |   | ||||     ||   |||    |    |  |   | | |||   |   |  
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcggcacattat--------tgtgatttgcatgatcaata--ctgtaaatttccctgttttgaccatacaattttactttaccg-ttggggaatttag

upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgagtattctg--ttatatatga--aatttgaataataattaagcacaacattttta-aattcaaacctaggag-acatgatgagctgattgcaaagcat
 || |||||  | ||  ||||||||||  ||||  |  | |  ||||||| ||||||||| || ||||||||||| |||||||| ||||| ||||| |||||||  |   |||      || | |||||  || |   ||    |   |   |||||  || |  |  || |  | | |     | |   | | |   ||      
GGGGCAAGGCTTGAAGACTGAAAATCGGATTGGGCAAATGAAAGGTGAATATGATGTGCAATCCACATTTGAGGGTGACAACAACGTTCTGATGCAACAGgtaatgtctatatatcagtttctttatgatgaactctcatgtacaaggacggcaacacgttgatgacacagatatggcaatgtctaacatggtcacctca------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326408|gb|FK017695.1|FK017695
EST:     TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAG                         ATTAGCAAGGCACTCTTTGCAGAATATGTAGCAAGTCAGAAGAAAAAGAAA
genomic: TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgag ... ttcactccagATTAGCAAGGCACTCTTTGCAGAATATGTAGCAAGTCAGAAGAAAAAGAAA
EST: gi|19453582|gb|BM954992.1|BM954992
EST:     TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAG                         ATTAGCAAGGCACTCTTTGCAGAATATGTAGCAAGTCAGAAGAAAAAGAAA
genomic: TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTAATGCAGCAGgtaaaatgag ... ttcactccagATTAGCAAGGCACTCTTTGCAGAATATGTAGCAAGTCAGAAGAAAAAGAAA