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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTCTCAGCAGAAATGGTACATTATGCACAAACAGATGCACACTATCTATTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGGACAATGgtattcactcttgtctgatattgcgaggaaagaaagaaaaatataaacaaaaaatatctctaataaattttaagcatttatcaagtaaactgaaactttgaaaatctaccttgtcaacgtgtttttctcctccttttatatttgccccatgcttcccaaaaatgtggctgag

Basic information

species Glycine max
transcript GLYMA12G10530.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G10530.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0059g00620.t01 (Vitis vinifera), 5'ss of exon 6
CCTCTCTCAGCAGAAATGGTACATTATGCACAAACAGATGCACACTATCTATTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGGACAATGgtattcactcttgtctgatattgcgaggaaagaaagaaaaatataaacaaaaaatatctctaataaattttaagcatttatcaagtaaactgaaactttgaaaatctaccttgtcaacgtgtttttctcctccttttatatttgccccatgcttcccaaaaatgtggctgag
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CCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTGAGCTCAGGCAACATGATTCTGgtatgc-cttctctcttgtattcttatttcttgtaagccactttatcattgtcttatttgcatgcaagtggagacactgaatgaacaga-taagaccctgaa----------------------------------------------------------------------