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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCTGAAAGCAGATTACCTTGCAATACAAAACTTCCTGAGGATTGTCACTATCAGCCAGAAGATCTTGTCAAGTTATTTCTTCTGTCTAATGTAAAGgtagtttcttttagatgagtttcaaagtgttctcactggtgatttcttgtcaagtttcttttagatatgtgaagacatgtagcggtgtttattttatatatctgatgatttctattctttctttag

Basic information

species Glycine max
transcript GLYMA12G10280.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040786|gb|BM309080.1|BM309080
EST:     ACTATCAGCCAGAAGATCTTGTCAAGTTATTTCTTCTGTCTAATGTAAAG                         TGTCTCGGGAGGAAGGCAAACAGGTTCTCAG
genomic: ACTATCAGCCAGAAGATCTTGTCAAGTTATTTCTTCTGTCTAATGTAAAGgtagtttctt ... ctttctttagTGTCTCGGGAGGAAGGCAAACAGGTTCTCAG
EST: gi|51338274|gb|CO982140.1|CO982140
EST:     TCTGTCTAATGTAAAG                         TGTCTCGGGAGGAAGGCAAACAGGTTCTCAG
genomic: TCTGTCTAATGTAAAGgtagtttctt ... ctttctttagTGTCTCGGGAGGAAGGCAAACAGGTTCTCAG