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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAGgtataaaatgctactggttacaatcatgtcttacaagctttaatgctcatacattctttaatatgtttaaatccggtaaattaagaagttgtaagtgtca...

Basic information

species Glycine max
transcript GLYMA12G09540.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09540.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 9
CAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAGgtataaaatgcta-ctggttacaatcatgtcttacaagctttaatgctcatacattctttaatatgtttaaatccggtaaattaagaagttgtaagtgtca----
| || || || ||||||||||| ||||||||||| || |||||||| | ||| || ||||| || ||||||| |||||   | ||||  || || || |||||||  ||  || || |   |  | ||   ||||  | |   |    | |  |||  ||||       ||  ||   |||  ||||   ||  ||  |||    
CTGACCCTCAATATGAAAATGTGCAACACATCATCTGCTGTGATTCATTTGCCACTTATGCATATGACTTTGAGTTTGCCCATAACGACGGTTTCTCCAGgtatattattttaacttgaccctgtaatcagttacttgttactaaatgc-tgtatttgttaaagg----aatcccttaaaaggaagataatgccagaatcaggat

upper sequence: GLYMA12G09540.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 9
CAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAGgtataaa-atgctactggttacaatcatgtcttacaagctttaatgctcatacattctttaata-tgtttaaatccggtaa-attaagaagttgtaagtgtca
||||||||||||| |||||||| |||||||| || ||||||||||||||||  |||||||| ||||| ||||  ||||  ||||    ||| ||||| ||||||||| ||| | |||   |  ||||   ||   |   ||   |   || |  |  || | || |   | | |   |||  || ||   |||| |  |    
CAGATCCACAGTACGAAAATGTGCAACACATTATTTGTTGTGATTCTTATGTCACATATGCCTACGATTTTGATTTTGCCAACACTACTGGGTTTTCCAGgtataaatatgtttctgtcaaagatcaatcctattatctttctctagccaaatgtaattaagtactaaatgactattgtaggatcaatttgttgcatttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208080918|gb|GD873802.1|GD873802
EST:     GCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAG                         AACTAAATCAGATGTTCCTACAATTCAGATTGCATTTCAGTACTCAGTTGT
genomic: GCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAGgtataaaatg ... cttttgacagAACTAAATCAGATGTTCCTACAATTCAGATTGCATTTCAGTACTCAGTTGT
EST: gi|16996632|gb|BM086004.1|BM086004
EST:     GCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAG                         AACTAAATCAGATGTTCCTACAATTCAGATTGCATTTCAGTACTCAGTTGT
genomic: GCTACATATGCTTACGACTTTGTGTTTGAGAACAACGTTGGATTTTCAAGgtataaaatg ... cttttgacagAACTAAATCAGATGTTCCTACAATTCAGATTGCATTTCAGTACTCAGTTGT