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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCACCAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgcttaaagttagattattttgaagtttgcaaataggaatgcttcatcctgtttattgaatcctggtgtatctttttcatattgagttgcaca...

Basic information

species Glycine max
transcript GLYMA12G09250.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7587973|gb|AW703779.1|AW703779
EST:     ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG                         ATTCATTCTTGACAAGAAGATTGGTATTGGACAACCCANACGTATAGAGAA
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|14011898|gb|BG726820.1|BG726820
EST:     ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG                         ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAGCGGATAGAGAA
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|7685521|gb|AW756169.1|AW756169
EST:     ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG                         ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|5605812|gb|AI899910.1|AI899910
EST:     TTCATTCTTAGATGAAGG                         ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
genomic: TTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|18692987|gb|BM521835.1|BM521835
EST:     ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG                         ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|6482991|gb|AW202130.1|AW202130
EST:     ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG                         ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|298191307|gb|HO038786.1|HO038786
EST:     ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG                         ATTCACTCTTGACAAGAAAATTGGTATTGGGCAACCCAAACGTATAGAGAA
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: gi|207706644|gb|GD688592.1|GD688592
EST:     TTAGATGAAGG                         ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
genomic: TTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGCACCAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgcttaaagttagattattttgaagtttgcaaataggaatgcttcatcctgtttattgaatcctggtgtatctttttcatattgagttgcaca

- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - -  TGGAGG