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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatgttctgtgagaaatttctatttataatccattcctaaccactttccctcactttaactgataaaatggaattctgcgggcag

Basic information

species Glycine max
transcript GLYMA12G07570.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G052630_T02 (Zea mays), 5'ss of exon 7
ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatg-tatgcatgttctgtga-gaaatttct----atttataatccattcctaaccactttccctcactttaactgataaaatggaattctgcgggcag
 |||| |||||| ||||||||||| |||||||| ||| ||||||| || ||||||| | |   |  |   | | |||| || |    |   ||  |  | ||    ||| |||  |||  | |||     |                    
GTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACACgtatgatgtttctacttgctcatgaaacttatgaaaagaaatggtgaaatcggggccaatttaactccatctaatctgcag-------------------

upper sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G052630_T03 (Zea mays), 5'ss of exon 5
-------------------------------------------------ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatg-tatgcatgttctgtga-gaaatttct----atttataatccattcctaaccactttccctcactttaactgataaaatggaattctgcgggcag
                                                  |||| |||||| ||||||||||| |||||||| ||| ||||||| || ||||||| | |   |  |   | | |||| || |    |   ||  |  | ||    ||| |||  |||  | |||     |                    
TCTACAGCTTTCTGGTCATGTTACTGATGGTCCTTGTTCACGACTACAGGTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACACgtatgatgtttctacttgctcatgaaacttatgaaaagaaatggtgaaatcggggccaatttaactccatctaatctgcag-------------------

upper sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G45300.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatgttct---gtgagaaatttctatttataatccattcctaac-cactttccctcactttaactgataaaatggaattctgcgggcag
||||| |||||| ||||||||||| ||||| || ||||| ||||| ||||||||  |   |||  |||   |  | |||| ||| | || | |  || |||    |||| || ||  || |  || | |     |  |     | ||||
ATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATACgta-atccccattctctcaagataaaaatatctgtgtaaattaaatccctttttcactgtctctttctct--ctaacat--ctgtctctcctgagcag

upper sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 5'ss of exon 9
ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatgtt-ctgtgagaaatttctatttataatccattcctaacc------actttccctcactttaactgataaaatggaattctgcgggcag
||||| |||||| |||||||| || ||||||||||||||||||||||| ||||| |  |   |  | | |   |      || |||    ||  |||  || |         |    | | ||| | | | ||||| | |            
ATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACgtaagcctcattactacagcatgctcccccttttttctctcttttctgaaactggagaggatatgataattttcattaacaaaattgcag-----------