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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgtaactactgagcccaaatgaaaatttgagtacttgaaatgaataatatcagagcccgtgagtgtacatgggcattagtcattagtttttcttca...

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G133854_T01 (Zea mays), 5'ss of exon 7
AATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgtaactactgagcccaaatgaaaatttgagtacttgaaatgaataatatcagagcccgtgagtgtacatgggcattagtcattagtttttcttca------
||| |  | |||   ||||| |||||||| ||||| ||| ||||  ||   || |  || ||||| |||||||||||||| ||||||| |||||||||  | |   || |      |  ||   |||| | |  ||        |  | || |    | |   | |    |   |||  ||   |   ||     |      
AATGTTATTCATGGTGATATCAAGCCAGACAATCTCTTGGTTACCAGTACCGGCAACGTGAAGATCGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctttagtcctgtaacttgtgtattttattgattttt-----tcttgtctggaaacattgttttttcagctgattgatc-ccacccttgaaagagataaa

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G057084_T01 (Zea mays), 5'ss of exon 8
AATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgta---actactg-agcccaaatga--aaatttgagtacttgaaatga-ataatatcagagcccgtgagtgtacatgggcattagtcattagtttttcttca
||| |  | |||   ||||| || ||||| ||||| ||| ||||  ||   || |  || ||||| |||||||||||||| ||||||| |||||||||  | |    ||| ||| | | || || |   | | ||  |  ||    ||  ||   |  |  |      |||  | ||||     |  ||| |           
AATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtgtgtttttttcttttgttatggaaatattgttttccagt-caaatggatgc-acccatgaaaggga-----

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 9
AATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgtaactactgagcccaaatgaaaatttgagtacttgaaatgaataatatcagagcccgtgagt-gtacatgggcattagtcattagtttttcttca-
 || |  | ||   ||| ||||| || || ||| || || ||||| ||   |||||||| |||||||| ||||||||||||||||| | |||  |||||||  |     ||| | |   | ||  ||||         |||   | ||||   | |  |||| | |    |  ||||   ||  |  | || || || 
GATGTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGAAGATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAGgtaataaa-----tgatctc---ttaatttttggtcttcattaattcttgatat-gcatcgtgtgatttgagtgttagcatcgatc--tgttgttgctacag

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 9
AATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgtaactactgagcccaaatgaaaatttgagtacttgaaatgaataatatc-agagcccgtga-gtgtacatgggcattagtcattagtttttcttca
|||||||| |||  ||| ||||| ||||| ||||| ||| ||||| |   ||||||||| ||||||| |||||| |||||||||||||  |||||||||||| |||| ||  |  ||    | ||||||  |      ||  | | ||  | | |  | ||||  | |   |    | || | | |  |     |  |
AATATAGTGCATGGGGACATTAAACCAGACAATCTTTTGGTTACTCGCACTGGTACAGTGAAGATAGCGGATTTTAGTGTCAGCCAGGTATTTGAGgtaatggaacttctttgaaca--ccataatttggttgagaataagaactcatgcctatattctgtgacatttgtttttctagtaatgaatgatacacatgaa