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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatattatacttgtttctcttttgagtgttgttatcttgattcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattag

Basic information

species Glycine max
transcript GLYMA12G06980.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06980.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
TGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatattatacttgtttctcttttgagtgttgttatcttgattcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattag--
||||||||| || || || || | ||| ||||| || ||||||||||| ||||||||||||||||||||||  |  | | |  ||    ||||  |     |    ||||  || ||| | | | | ||| |   |  |   |       ||      | |||   
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgca--aaaataattataattttatg-accataggattgac-catgtattggttattattaagattatttgaagcccaattttcttcatgttaaag

upper sequence: GLYMA12G06980.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 10
TGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatattatacttgtttctcttttga-gtgttgttatc--ttga---ttcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattag
 || ||  |  | || || || | |||||| ||||||||||| ||||||||||| |||||||| |||||| ||  |   |   ||| |   |     ||   ||||   | ||   | |   | |   |  |   | ||  |     | |        | ||||      
AGGGGAGACGATGACGGTGCAGGCTCCAGGCACTCAAACTCGTAGTTTTTGCTACGTCTCTGATATGgtacatcctgatcccctttatgaatcatcatgcaattattggtggagagtccggatgcctagcatatctcacagtagcggtgttcgaaaaaggaattaga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193521072|gb|FK478125.1|FK478125
EST:     TTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG                         GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
genomic: TTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
EST: gi|208182321|gb|GD980334.1|GD980334
EST:     AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG                         GTTGATTGGACTTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCA
genomic: AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGA-TGGAC-TTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCA
EST: gi|208205622|gb|GE006621.1|GE006621
EST:     AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG                         GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
genomic: AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
EST: gi|209703510|gb|BW656548.1|BW656548
EST:     TCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG                         GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
genomic: TCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC