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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaaggatattcttataactataagtgggaaaattttctcaagaacatacatataattgataacatgacagaatgaaaacattggtctgggataaatatgggatgattttgtgcttttttactaatgatgtctgattatgtaattag

Basic information

species Glycine max
transcript GLYMA12G05350.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05350.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G142806_T01 (Zea mays), 5'ss of exon 9
AGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaaggatattcttataactataagtgggaaaattttctcaagaacatacatataattgataacatgacagaatgaaaacattggtctgggataaatatgggatgattttgtgcttttttactaatgatgtctgattatgtaattag
| ||||||||   |||||| || || || ||| | || |||||||||||||| ||||||||||||||||| ||||| || || ||||||||         |||| ||||  |   || || | || |   |   ||    | |||    |  |  |    | |                                                                          
AACCTGTTTCCAAGCACATTGAAGAGCAAGGATTAGAGTTTCTTCAGTTTGCCTTCCGCTGGTTCAACTGCCTTCTGATACGAGAGgtttg---------tcttgtaacacttgatgagatatttattatacacaccacaaaatagccaaccatttcgttgcag-------------------------------------------------------------------------

upper sequence: GLYMA12G05350.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 8
AGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaaggatattcttataactataagtgggaaaattttctcaagaacatacatataattgataacatgacagaatg-aaaacattggtctgggataaatatgggatgattttgtgcttttttactaatgatgtctgattatgtaattag
| ||||||||  ||||||| ||||| || || ||||| |||||||| ||||||||||| ||||||||||||||||| || || ||||||||      || |   || ||||   ||  |         ||| ||        |   ||  |  | | |   | |  | | ||| ||||     |||  |                                                 
AACCTGTTTCAAGGCACATGGAGGAGCAAGGGCTTGAGTTTCTTCAATTTGCTTTCCGTTGGTTCAACTGTCTTCTAATACGAGAGgtttgtctcactacttgcatcacta---gtttgtgctccaagtcatgatttcctcgagttttcttttccttatttagtccagagcatgggtcaatcttaagaa-------------------------------------------------