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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgttgtatggctggttattgcttgaactgggtggtggagggctgatttgcacctttttcattgtgtaactttattgactatgtcacttctttcttgcag

Basic information

species Glycine max
transcript GLYMA12G04460.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 10
ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgt---tgtatggctgg---------ttattgcttgaactgggtggtggagg-gctgatttgcacctttttcattgtgtaactttattgactatgtcacttctttcttgcag
||||| |  | |||||| ||||| || || || |  || ||||||||| |||||||||| |||||||| ||||| ||||| |  ||||| || ||||||||||||  |   |   |||   |         |||||  ||    |   |  |  |     | ||||        || ||  ||| || || |  | | ||| |     ||   ||||
ATGATGCATAATGGTGACGCACGACGTGCTAGACAGGTTGTAAAAGTTTTAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGgtaagacctccttacttggacagaaccaggttttattttttattttatttaatttatttatttatttattttcaattaatattgtcacattctctattttgttatcatctttaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924506|gb|AW830532.1|AW830532
EST:     TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATG                         GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
genomic: TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
EST: gi|19053078|gb|BM731745.1|BM731745
EST:     TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATG                         GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
genomic: TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
EST: gi|22524635|gb|BU083446.1|BU083446
EST:     TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG                         GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
genomic: TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
EST: gi|208268732|gb|GE069433.1|GE069433
EST:     TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATG                         GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
genomic: TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
EST: gi|193359037|gb|FK325467.1|FK325467
EST:     GCCAGACCACAATTATCCAATG                         GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGA
genomic: GCCAGACCACAA-TATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGA
EST: gi|193725887|gb|FK660195.1|FK660195
EST:     TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATG                         GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT
genomic: TAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCAGAAGCTGAAGAT