Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGgtaacagcaaatattctgataataatttccttgtgatttgattttgaggcatgctaaacataaagtcaaaattggtataagtcacggcatatgtgtcttt...

Basic information

species Glycine max
transcript GLYMA12G04220.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 9
lower sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 9
ATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGgtaaca-gcaaatattctgataataatttccttgtgatttgattttgaggcatgctaaacataaagtcaaaat-tggtataagtcacg-gcatatgtgtcttt---------------------------------------------------------
|| ||||| ||||||||||||||||||||||| |||||     | || |||||||| || || ||| ||||||||||||| | |  ||   |  || | ||  |           | ||||  |   |||  |||   |||  |   || |  ||| |   ||| || |  |    | |                                                         
ATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTATTCAGAGGCGTTGTGAAACTGAGGCGAGgtaagatgttaagccttagaaattatgtaggccaatccctaatttctatttatgagaaaggaaaacccgttatcttttattatcaacgagcttgagaacgtgtagtagctagccttattatctgaaggctaatatcgctgaacaactatctattgtttag

upper sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 9
ATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGgtaa-cagcaaatattctgataataatttccttgtgatttgattttgaggcatgctaaacataaagtcaaaattggtataagtcac-ggcatatgtgtcttt
|| |||||||| || ||||| || |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||   || ||| |   |||| |  |||||||     | || | | |  ||||  | | | ||| |  |  ||  | ||    |  ||  |   |||  | 
ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCAGAGGAGTAGTAAAAATGAGGCGTGgtaagttgctaat-tatggatattgctttccttacttctggactgttaaacatgtaacagagaaactttac-ttaatttattctattggttttcttgttatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13482207|gb|BG511550.1|BG511550
EST:     ATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAG                         GTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTACG
genomic: ATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGgtaacagcaa ... caatttatagGTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTACG