Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctcttatcttattaccgggtttccattatattacttcatacttccacctatcattttatcttttacttttatgatttgtttttag

Basic information

species Glycine max
transcript GLYMA12G03060.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G079256_T02 (Zea mays), 5'ss of exon 8
TTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgca----tgcctcttatcttattac--cgggtttccattatattacttcatacttccacctatc---attttatcttttacttttatgatt-tgtttttag
 || | ||||||||  |||  || || ||||||||||| || ||||||||||| || ||||||||||||||  | || || ||||| ||  |||| ||||| |    ||| |  |    |  |    ||   |||  || | || ||  ||  |  | || ||     |  |  |||||    | |  | | || ||||  
CTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATTTCAGCATCTAGTTATTCTTATGTTTCTTTACTTCAACACTTCCTTCCCATAATGAATCCAGgtaatattgcatactgatatgctgtgtcgatattctcttctgttcctatatgttgacgccgatttgggtgatcccttttttagtcaacactatgattttg-

upper sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 7
TTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctcttatcttattaccgggtttccattatattacttcatacttccacctatcattttatcttttacttttatgatttgtttttag
 |  ||||||||||  |||| || ||||| ||||| || ||||| || |||||||| | |||||| || || | ||||||||| |||||  ||||||||||||||   |  || |  |       | ||  || |||| |||   | |      | | ||||  |  | ||   | |||||||        
CTTCTGGAGACATCAAGGAAAGGCTATCTCGCTGCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTGAGGCATTTTCTGCCAATTATGAACCCAGgcatgtaacaaatttcgt------atgtctctt-tattccttgtaaatatgttttcttatttggttctcta---tgatgatttag------

upper sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 8
TTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctcttatcttattaccgggtttccattatattacttcatacttccacctatc---attttatcttttacttttatgattt-----gtttttag-----------------------------
 |||||||||||||  | || || |||||||| |||||||||||||| |||||||| || |||||||||||||||  |||  |||| ||  ||||||||||||  | ||||  |  || ||  | | |   ||   || |       ||   |  | |   | ||  | ||||||  |  | | ||     |||  |||                             
CTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATATCTGCATCAAGTTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTATAATGAACCCAGgcacacatctttccccat-acttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963692|gb|BM270438.1|BM270438
EST:     TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctct ... ttgtttttagGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|6915325|gb|AW396855.1|AW396855
EST:     TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctct ... ttgtttttagGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|192301956|gb|FG995574.1|FG995574
EST:     TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctct ... ttgtttttagGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|16347093|gb|BI972688.1|BI972688
EST:     TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgcctct ... ttgtttttagGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG