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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATGGTGGGGAATTTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTGgtaaatcatcaatccctaagactttatttatgctaaacctgataatcacatttttttcattactgcatgctttttgttcttttttcag

Basic information

species Glycine max
transcript GLYMA12G01250.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01250.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 11
ATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATGGTGGGGAATTTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTGgtaaatcatc--aatccctaagactttat---ttatgctaaacctgataat---cacatttttttcattactgcatgctttttgtt-cttttttcag
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ATTGAGGCAGTCCCTATATACATTGGATGACTGCCTTAATGGTGGTGAGTTTAAAGCCTTAGCAGCAGTCAATAGTCTAAAGCGAATATTTCCAGCTGTGgtaattgattttactcatcatgcctttatgagctagggacaagtaagcaaaaggtggatatctcaaacta-tgtatttttgctgttgcttttattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317615|gb|GR826599.1|GR826599
EST:     TTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTG                         GAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAA
genomic: TTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTGgtaaatcatc ... cttttttcagGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAA