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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgttatttttgcatcatgtatttgtcaactctagagttgcttttgcatattatttttaatatattgttgtcttggtaactcaaaatgatgttag...

Basic information

species Glycine max
transcript GLYMA11G33320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 10
GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgttatttttgcatcatgtatttgtcaactctagagttgcttttgcatattatttttaatatattgttgtcttggtaactcaaaatgatgttag---------------------------------------------------
|||||||||||||||| | ||||||||||| ||||||||||| |||||||    |   | |||      || |  || | ||        |   || | || | ||  |   | | | |  | |||  ||  ||  ||   |||| |                                                    
GTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAGgtgatttaccaatttg-----attttctttttaatatatacatcatttgttcacaatacctagtagaaaataatctctcagtcgct-gaatccatgtcatgaatgaccctgaaattctcatttttctttgaactctggtcctttcttacag

upper sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 9
GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgttatttttgca-tcatgt--atttgtca-actctagagttgcttttgcatattatttttaatatattgttgtcttggtaactcaaaatgatgttag
||||||||||||||||||||| |||||||| ||||||||||| || ||||  |||| ||   |   | || ||   |||| | | || ||  |  |  ||| | ||    |    ||       |||  ||| | | | |   |  ||    
GTACTTTGACCGTGATGTTGAGTGCATCTTCAAGTTTTTCAGCAAGAGgtcagctgctaacctaaaactcttgctaatttttgatacccttaaactaattt-gaattccttaaagaaaccccgcttgcattgatcatttagccttctgg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21639225|gb|BM253055.1|BM253055
EST:     GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAG                         GTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA
genomic: GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgtt ... tctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA
EST: gi|18730095|gb|BM525678.1|BM525678
EST:     GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAG                         GTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA
genomic: GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgtt ... tctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA