Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCCAAGTATCACTTCTCTTGTCAATTCATGGCTGATACAATTGCAATGAATGCATCAGATTTCATCATAACCAGCACCTATCAGGAAATTGCAGGAAGgttagaaatattttttgacatcctttctcttgattgcctggaaaatggaattttgtctggcacactcaagaaatttacttacatagtttataaaatagtaccaatatcaaaattgatagaaacaagagaattaataaaacaaagaagaaaaatcaattgaagtttgtaacatatttagttctgaaagttcttgtttgcag

Basic information

species Glycine max
transcript GLYMA11G33240.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33240.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0079g00230.t01 (Vitis vinifera), 5'ss of exon 9
ATCCCAAGTATCACTTCTCTTGTCAATTCATGGCTGATACAATTGCAATGAATGCATCAGATTTCATCATAACCAGCACCTATCAGGAAATTGCAGGAAGgttagaa--------atattt-tttgacatcctttctcttgattgcctggaaa-atggaattttgtctggcacactca-agaaatttacttacatagtttataaaatagtaccaatatcaaaattgatagaaacaagagaatt--aataaaacaaagaagaaaaatcaattgaagtttgtaacatatttagttctgaaagttcttgtttgcag
| ||||| ||||| ||||| || ||||| |  |||||||||||| ||||||||||| |||||||||| || || ||||| || ||||||||||| ||||||| ||||        | |||| | |||   || | |  |  | ||| |  ||| || |||    | ||||   |||   ||| ||||   ||  | |  |  | |  ||    | | |      |  |     |||  |  |   |    |  | |  | || |  | |||||   ||  |       |  |  || |               
AGCCCAAATATCATTTCTCATGCCAATTTACAGCTGATACAATTTCAATGAATGCAGCAGATTTCATTATCACAAGCACATACCAGGAAATTGCTGGAAGgtcagaatactaaccaaatttatctgatgcccatacatt--actgcttataaacattgaaaa--ggctggtcaactggcagacatttggctatgttggctcgatatcag----agtgttggttctccttatctcaaagggttcccaccttactataagataacagactattgacaatttcactgctaatgttgttgcag--------------

upper sequence: GLYMA11G33240.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ19561 (Selaginella moellendorffii), 5'ss of exon 10
ATCCCAAGTATCACTTCTCTTGTCAATTCATGGCTGATACAATTGCAATGAATGCATCAGATTTCATCATAACCAGCACCTATCAGGAAATTGCAGGAAGgttagaaatattttttgacatcctttctcttgattgcctggaaaatggaattttgtctggcacactcaagaaatttacttacatagtttataaaatagtaccaatatcaaaattgatagaaacaagagaattaataaaacaaagaagaaaaatcaattgaagtttgtaacatatttagttctgaaagttcttgtttgcag
||  ||| ||||| ||||| ||||| ||||  || |||   ||||| |||||     | ||||||||||| || ||||| |||||||||||||| |||||||   |  | ||||||  |  ||| |||| ||   |     |||      || ||  ||                                                                                                                                             
ATGACAAATATCATTTCTCCTGTCAGTTCACAGCCGATCTCATTGCTATGAACCATGCTGATTTCATCATTACGAGCACTTATCAGGAAATTGCTGGAAGgt-gcagctttttttttcctccctctctcctg--cgttctaaaagc----ttatgcatgcag------------------------------------------------------------------------------------------------------------------------------------------