1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCACGTGATGATATTCTTGAAGCCTACAGACTAGCTGTTAAAGCTGATCCCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGgtaaatgctctatttgaattttagtctgttaggaatctgaaatatctttgagtatgtatctaaggaacttgtgcaatcaaacaagcaatttgatttgggc...
species | Glycine max |
transcript | GLYMA11G25900.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAA-TGNATGAG GCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACEST: gi|57574924|gb|CX547899.1|CX547899
genomic: CGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTG-ATGAGgtaaatgctc ... taatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGAC
EST: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAG GCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACAEST: gi|37993938|gb|CF805684.1|CF805684
genomic: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGgtaaatgctc ... taatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACA
EST: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAG GCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACA
genomic: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGgtaaatgctc ... taatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACGTGATGATATTCTTGAAGCCTACAGACTAGCTGTTAAAGCTGATCCCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGgtaaatgctctatttgaattttagtctgttaggaatctgaaatatctttgagtatgtatctaaggaacttgtgcaatcaaacaagcaatttgatttgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA