1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATTGTTTTTAGCATGCCTCAAGGATTTTGCAGACTTTGCCAAATCCAAGGATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgttactacatttaatatttttatttatggcacagtgttttatctttgggtgctgtgtgggcatttattgccttggatacagaggaatctttctt...
species | Glycine max |
transcript | GLYMA11G21490.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAGGCTTCAATAAEST: gi|208317518|gb|GE116215.1|GE116215
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAEST: gi|105633792|gb|DW247155.1|DW247155
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAEST: gi|58019925|gb|CX706667.1|CX706667
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAEST: gi|298194263|gb|HO040911.1|HO040911
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCATCTGAGAAATATTTCAAACTGCCTTACAA GATTGAGAATGAEST: gi|16105648|gb|BI893388.1|BI893388
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAEST: gi|207804556|gb|GD780179.1|GD780179
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCAACCCAAAGCTTCAATAEST: gi|254340086|gb|GR858211.1|GR858211
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCA-CCCAAAGCTTCAATA
EST: TAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAEST: gi|57574660|gb|CX547635.1|CX547635
genomic: TAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAEST: gi|20812785|gb|BQ297263.1|BQ297263
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
EST: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAA GATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
genomic: GATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgtta ... tggtttgtagGATTGAGAATGACAAGGTGGAAAACTATTCCATCACCCAAAGCTTCAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGTTTTTAGCATGCCTCAAGGATTTTGCAGACTTTGCCAAATCCAAGGATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAACTGCCTTACAAgtaagtgttactacatttaatatttttatttatggcacagtgttttatctttgggtgctgtgtgggcatttattgccttggatacagaggaatctttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg