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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGgtataaaatgctactggttacaatcaagtcttacaagctttaatgctcgtacatttttaatgtgtttatttaagtcaggtaaattaagttgtaagtgtca...

Basic information

species Glycine max
transcript GLYMA11G18930.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 9
CAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGgtataaaatgcta-ctggttacaatcaagtcttacaagct--ttaatgctcgtacatttttaatgtgtttatttaagtcaggtaaattaagttgtaagtgtca
| || || || ||||||||||| ||||||||||| || |||||||| | ||| || ||||| || ||||||| |||||   | |||   || || || |||||||  ||  || || |   |  | |    ||||  | |  | |||||| |||  | || || |  |   || ||   | |  |||       | ||  |  
CTGACCCTCAATATGAAAATGTGCAACACATCATCTGCTGTGATTCATTTGCCACTTATGCATATGACTTTGAGTTTGCCCATAACGACGGTTTCTCCAGgtatattattttaacttgaccctgtaatcagttacttgttactaaatgct-gtatttgttaaaggaatcccttaaaaggaagataatgccagaatcaggat--

upper sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 9
CAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGgtataaa-atgctactggttacaatcaagtcttacaagctttaatgctcgtacatttttaatgtgtttatttaagtcaggtaaattaagttgtaagtgtca
||||||||||||| |||||||| |||||||| || ||||||||||||||||  |||||||| ||||| ||||  ||||  ||||  | ||| ||||| ||||||||| ||| | |||   |  |||||  ||   |   ||   |   |  |  |  |||| ||  | | | |     |    || || ||||     |  
CAGATCCACAGTACGAAAATGTGCAACACATTATTTGTTGTGATTCTTATGTCACATATGCCTACGATTTTGATTTTGCCAACACTACTGGGTTTTCCAGgtataaatatgtttctgtcaaagatcaatcctattatctttctctagccaaatgtaattaa-gtactaaatgactattgtaggatcaatttgttgcatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18712711|gb|BM522679.1|BM522679
EST:     GCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAG                         AAGTAAATCAGATGTTCCTACAATTCAGATTGCATTCCAGTACTCAGTTGT
genomic: GCTACATATGCTTACGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGgtataaaatg ... cttttgacagAAGTAAATCAGATGTTCCTACAATTCAGATTGCATTCCAGTACTCAGTTGT