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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatatgttctgtgagaaatttctatatataatccattcctaatcactttccctcactttaactgacaaaatgggattctgcgggcag

Basic information

species Glycine max
transcript GLYMA11G15900.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G052630_T02 (Zea mays), 5'ss of exon 7
ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatatgttctgtga-gaaatttct----atatataatccattcctaatcactttccctcactttaactgacaaaatgggattctgcgggcag
 |||| |||||| ||||||||||| |||||||| ||| ||||||| || ||||||| |||  | |  |   | | |||| || |    | | ||  |  | ||     || |||  |||  | |||    ||                    
GTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACACgtatg-atgtttctacttgctcatgaaacttatgaaaagaaatggtgaaatcggggccaatttaactccatctaatctgcag-------------------

upper sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G052630_T03 (Zea mays), 5'ss of exon 5
-------------------------------------------------ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatatgttctgtga-gaaatttct----atatataatccattcctaatcactttccctcactttaactgacaaaatgggattctgcgggcag
                                                  |||| |||||| ||||||||||| |||||||| ||| ||||||| || ||||||| |||  | |  |   | | |||| || |    | | ||  |  | ||     || |||  |||  | |||    ||                    
TCTACAGCTTTCTGGTCATGTTACTGATGGTCCTTGTTCACGACTACAGGTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACACgtatg-atgtttctacttgctcatgaaacttatgaaaagaaatggtgaaatcggggccaatttaactccatctaatctgcag-------------------

upper sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G45300.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatatgttctgtgagaaatttctatatataatccattcctaat-cactttccctcactttaactgacaaaatgggattctgcgggcag
||||| |||||| ||||||||||| ||||| || ||||| ||||| ||||||||        | | |   |  | |||| ||| | || | |  || |||  | |||| || ||  || |  || |||     |  |     | ||||
ATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATACgtaatccccattctctcaagataaaaatatctgtgtaaattaaatccctttttcactgtctctttctct--ctaacat--ctgtctctcctgagcag

upper sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 5'ss of exon 9
ATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgcatatgttctgtgagaaatttctatatataatccattcctaatc------actttccctcactttaactgacaaaatgggattctgcgggcag
||||| |||||| |||||||| || ||||||||||||||||||||||| ||||| |  | |||   | | |   |      || | |    ||  |||  || |         |    | | ||| | | ||||||| | |            
ATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACgtaagcct-cattactacagcatgctcccccttttttctctcttttctgaaactggagaggatatgataattttcattaacaaaattgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400326|gb|BM177108.1|BM177108
EST:     TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
genomic: TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
EST: gi|209699170|gb|BW656185.1|BW656185
EST:     CTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAA-TGCTTTGTTCCAGACGAAAATATTCTT-G
genomic: CTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
EST: gi|7030287|gb|AW460070.1|AW460070
EST:     TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
genomic: TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
EST: gi|254338024|gb|GR849656.1|GR849656
EST:     TTCAATACTGCCCAGAAA-TGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
genomic: TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
EST: gi|254338023|gb|GR849655.1|GR849655
EST:     TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
genomic: TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
EST: gi|16346614|gb|BI972209.1|BI972209
EST:     TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
genomic: TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
EST: gi|15814693|gb|BI786968.1|BI786968
EST:     TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATAC                         GTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG
genomic: TTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACgtatgtatgc ... ctgcgggcagGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATATTCTTGG