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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGgtaactacagtatttattatttttgctcccacctccctttatccattataaacatggatatttgtatgaatag

Basic information

species Glycine max
transcript GLYMA11G15470.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15470.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 17
GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGgtaactacagtatttattatt-----tttg------------ctcccacctccctttatccattataaacatggatatttgtatgaatag
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GATTTGACATCTCAAGTGTCTGCTGAAAGTGACCCTGTTTCCCTTCTACCAAAAGTTGTTTCTCTGCTTTATGTACAGgtcagt-tagtacatattactgcatgtttgaatcttcaccatttttctttttccttttccttttctgagcatggattttcttgctcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348098|gb|GR851777.1|GR851777
EST:     CTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAG                         GTTTACCACAAAGCTCTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
genomic: CTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGgtaactacag ... gtatgaatagGTTTACCACAAAGCTCTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
EST: gi|11687562|gb|BF595238.1|BF595238
EST:     CTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTGTACTTTATATCCAG                         GTTTACCACAGAGCTCTTCAAGCTCCTGCGA-GGGCCATATGTGTTGCT
genomic: CTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGgtaactacag ... gtatgaatagGTTTACCACAAAGCTCTTCAAGCTCCTG-GAAGGGCCATTTCTGTTGCT
EST: gi|207688666|gb|GD673369.1|GD673369
EST:     CTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAG                         GTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
genomic: CTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGgtaactacag ... gtatgaatagGTTTACCACAAAGCTCTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
EST: gi|31474848|gb|CD416876.1|CD416876
EST:     CTGACCCTGTATCGCTTCTGCCCAAAGTTGTGTCTTTACTTTATATCCAG                         GTTTACCACAAAGCTCTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT
genomic: CTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGgtaactacag ... gtatgaatagGTTTACCACAAAGCTCTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATT