1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGGAGGTGCAAAGCCTGTTGTGAATGAAAATGCTGGTGGGATTATTACTGCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttcttctagtacaagttgcagagtttcaactccttttggataacaaattggtgatctacag
species | Glycine max |
transcript | GLYMA11G14960.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|22929510|gb|BU546649.1|BU546649
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|209708317|gb|BW683907.1|BW683907
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|20448388|gb|BQ252512.1|BQ252512
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|22526016|gb|BU084827.1|BU084827
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|7926014|gb|AW832040.1|AW832040
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|16104820|gb|BI892560.1|BI892560
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACTEST: gi|16105954|gb|BI893694.1|BI893694
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
EST: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAG GTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
genomic: GCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttct ... tgatctacagGTTTAAGCAGTTAAAAGAAGAGGACAAGAAGAAAAAGGTAAGCAAGGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAGGTGCAAAGCCTGTTGTGAATGAAAATGCTGGTGGGATTATTACTGCTGGACGCGCTAAAAGATCAGATTTGCAGCCAGTAAGGAATGGTGAAAGgtcagtttcttctagtacaagttgcagagtttcaactccttttggataacaaattggtgatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA