1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGATTCTGTACAGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactctccttccatgtcattcctaatttgcattctttcacacatttttatatttcaccacccatctgcgcatttggagcacactttcattgatga...
species | Glycine max |
transcript | GLYMA11G14530.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|15200699|gb|BI424484.1|BI424484
genomic: GAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|151393232|gb|EV263107.1|EV263107
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACTTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|254341616|gb|GR852753.1|GR852753
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|15201417|gb|BI424860.1|BI424860
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|6726196|gb|AW310550.1|AW310550
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|254341617|gb|GR852754.1|GR852754
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|120492720|gb|EH220887.1|EH220887
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|207735680|gb|GD713043.1|GD713043
genomic: CTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
genomic: CGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATTCTGTACAGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGgtaattactctccttccatgtcattcctaatttgcattctttcacacatttttatatttcaccacccatctgcgcatttggagcacactttcattgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccacc