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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAACCCTTCATGAGATGCTGCCACTTGCTTTTGAGTATGCGGGACAAAAACAATCTGTTAAGGCCGTCTTTTGTGGAATGGCTTTCATGTCTGCAAGgtaataataaaagcctcattgccaatataaaaacaaataaaaacttagaaccaatttgctttttgttgttactttggtaactatttaatgcagtacaactgtacaaggtgttaacatttagtattggtggatgtgcag

Basic information

species Glycine max
transcript GLYMA11G14090.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14090.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 11
TTCTAACCCTTCATGAGATGCTGCCACTTGCTTTTGAGTATGCGGGACAAAAACAATCTGTTAAGGCCGTCTTTTGTGGAATGGCTTTCATGTCTGCAAGgtaataataaaagcctcattgccaatataaaaacaaataaaaacttagaaccaatttgctttttgttgttactttggtaactatttaatgcagtacaactgtacaaggtgttaacatttagtattggtggatgtgcag
|||| ||| | ||||| ||||||||| | || ||||| ||||| || |  || ||| |||| ||||| ||||| | |||||||||||||||||||||||||||| ||| ||  |||    |   | |      || | |   | ||| ||    | || |  ||    | | ||||||| |  |  ||    | | ||    |                                   
TTCTTACCTTGCATGAAATGCTGCCATTGGCATTTGACTATGCTGGGCCGAAGCAAGCTGTCAAGGCAGTCTTCTTTGGAATGGCTTTCATGTCTGCAAGgtaa-aatcaactcctagcag--gacactctttcaga-agccatttaaaaagtttctggtaatttcaatgattttggtagccctacaacctggaagaaaaaaaa----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058120|gb|AI736596.1|AI736596
EST:     AAACAATCTGTTAAGGCCGTCTTTTGTGGAATGGCTTTCATGTCTGCAAG                         CTTGTATTTTCTACGTATCAGC
genomic: AAACAATCTGTTAAGGCCGTCTTTTGTGGAATGGCTTTCATGTCTGCAAGgtaataataa ... ggatgtgcagCTTGTATTTTCTACGTATCAGC
EST: gi|58014695|gb|CX701437.1|CX701437
EST:     AAACAATCTGTTAAGGCCGTCTTTTGTGGAATGGCTTTCATGTCTGCAAG                         CTTGTATTTTCTACGTATCAGCTTACCAGAGGACATGTAGATGGGAACTAT
genomic: AAACAATCTGTTAAGGCCGTCTTTTGTGGAATGGCTTTCATGTCTGCAAGgtaataataa ... ggatgtgcagCTTGTATTTTCTACGTATCAGCTTACCAGAGGACATGTAGATGGGAACTAT