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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctaactttccttggcattttctcataatctatttgaattcaatttcatattgtagctgtgctgattgtgagtagtctttgttggtcaatttgtta...

Basic information

species Glycine max
transcript GLYMA11G13330.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G13330.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctaactttccttggcatttt-ctcataatctatttgaattcaatttcatattgtagctgtgctgattgtgagtagtctttgttggtcaatttgtta-
 |||||| |||||||||  || || |||||||| ||| | |||||||||||||| || ||||||||||| || ||||||| ||| ||||| ||  | ||||| ||| |||  |   | | || |  ||     |    |||||     |||| | |   | |   |   ||       |   | | |  || ||      | 
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcgaatataacttgcgttggtcttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag

upper sequence: GLYMA11G13330.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 9
ACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctaactttccttggcattttctcataatctatttgaattcaatttcatattgtagctgtgctgattgtgagtagtctttgttggtcaa--tttgtta
||| ||| ||||  | || |||||||||||||||||| | || || |||||||| || ||||| ||||| || |||||||||||||| || ||| |||||||||| ||   ||  |   | |  |       | |  | | |   ||  | |         |||| |   |  |  |  ||  | |  || ||   ||| | 
ACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGgtgagatatgcttaatgctcttccttatgctgtttggtaggagaaaaactgaagacaagtgtgtgttccata-gctttatcaatatgagtaaaaacttgct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328709|gb|FK022523.1|FK022523
EST:     CTGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAGCG                         TGGTCAGACAAGCTCCAGAAACTTCATTTCCAAGAATTGGTAATGT
genomic: ATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGgtgagctaac ... ttccctttagTGGTCAGACAAGCTCCAGAAACTTCATTTCCAAGAATTGGTAATGT