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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggttatgccatagaaagtccttataattctatgtttcataaatttagactgacaatattcatgatctaaataatgatacag

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattt-tggttatgccatagaaagtcctta----taattctatgttt-cataaatttagactgaca-atattcatga---tctaaataatg--atacag
| ||  ||||||| ||||| || |||||||| || ||||| ||||||||||||||    ||| |    || |     | |  |     ||    |||    || | |   |     ||| ||  |||  |   |||   | ||    | |||
GAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGgtaaggatggcttcttcacaagttattcaaaggaacaaactaatgcacacacataacgatgtcaacacattctcacaagtatctctttcattctgtgcag

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 9
GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtatt-ttggttatgccatagaaa--gtccttataattctatgtttcataaatttagactgacaatattcatgatctaaataatga--tacag
||||||||||||| ||||| |||||||||||||| || ||||||||||| ||||||     |||     ||        || | ||  ||  | |  |   |  | | |   ||  | ||  |   | |||||  | |  | |||
GTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGGgtatagcctgttgctttatttcctccatcttcatgttttgacgagtaccacttctcgtaggatcacat--agtgtttaaattgtcacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAAGTTCTGCCAAAGCTGCACTGGAGAGTGATACAC
genomic: G-ATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGA-GTTCTGCCAAAGCTGCACTGGAGAGTGATACAC
EST: gi|15287567|gb|BI471458.1|BI471458
EST:     GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
EST: gi|12773652|gb|BG238579.1|BG238579
EST:     GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCCANNAGCTGCACTGGAGAGTGATACAC
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAA-AGCTGCACTGGAGAGTGATACAC
EST: gi|209721948|gb|BW680083.1|BW680083
EST:     GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     GATCCTTCA-TCTCTCTGACATACATTGCTTCAGAAAGGATCATTTCTGG                         ATATGGTGGTGGGATGA
genomic: GATC-TTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGA
EST: gi|7030180|gb|AW459963.1|AW459963
EST:     GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG                         ATATGGTGGTGGTATGAGTTCTGCCGAAGCTGCACTGGAGAGTGATACACG
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG