1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaagagtttctttagcttgtcattttactgtagaatattttctggatattgcagagtaatgtgtcatgtgtaaccaagacttgttttaatcaaattaat...
species | Glycine max |
transcript | GLYMA11G05940.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAG GATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCGEST: gi|192298605|gb|FG989251.1|FG989251
genomic: CCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaagagttt ... cttttttcagGATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCG
EST: CCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAG GATGATGACTTTAAACCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCGEST: gi|208090237|gb|GD890060.1|GD890060
genomic: CCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaagagttt ... cttttttcagGATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCG
EST: CCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAG GATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCGEST: gi|208221675|gb|GE017341.1|GE017341
genomic: CCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaagagttt ... cttttttcagGATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCG
EST: CCATGAACTGGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAG GATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCG
genomic: CCATGAACT-GGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaagagttt ... cttttttcagGATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGgcaagagtttctttagcttgtcattttactgtagaatattttctggatattgcagagtaatgtgtcatgtgtaaccaagacttgttttaatcaaattaat
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG