1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGATCTCTCAAATATATCTAGTAGGAATGTCCAATCACATAAAGATGATAGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAGgtacgattctagttactcatttctttcgctcattgcttttgttcatattacctgttttgtataattttggtgtgtaagaatctccatgttcaccaaaaagtgtataatatttttgtaaactgaatccttttatgtacttcatttctttag
species | Glycine max |
transcript | GLYMA11G03840.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAG CCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAGEST: gi|31467372|gb|CD409400.1|CD409400
genomic: AGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAGgtacgattct ... atttctttagCCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAG
EST: AGAAGTTGGAACATGGGGTCCACTAATGATCCCATGGATGTTTCTCAGAG CCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAGEST: gi|213591239|gb|DB982981.1|DB982981
genomic: AGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAGgtacgattct ... atttctttagCCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAG
EST: AGAAGTTTTAACATGGGGTCAAATAATGATCCAACGGGTGTTTCTCAGAG CCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAG
genomic: AGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAGgtacgattct ... atttctttagCCTTGTTGAGAAGAAATTAAATACCGAAGTAAACATCAATGGTGGACCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATCTCTCAAATATATCTAGTAGGAATGTCCAATCACATAAAGATGATAGAAGTTGGAACATGGGGTCCACTAATGATCCAATGGATGTTTCTCAGAGgtacgattctagttactcatttctttcgctcattgcttttgttcatattacctgttttgtataattttggtgtgtaagaatctccatgttcaccaaaaagtgtataatatttttgtaaactgaatccttttatgtacttcatttctttag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT