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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTGTCTCTGGCAAAAAAAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGTGAACAGgtcagatgtcagtttctcaggctgtttaattctctgctgatattttgtgcctgggctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttgtcttgcag

Basic information

species Glycine max
transcript GLYMA11G03590.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03590.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g01490.1 (Oryza sativa), 5'ss of exon 4
TCTTCTTGTCTCTGGCAAAAAAAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGTGAACAGgtcagatgtcagtttctcaggctgtttaattctctgctgatattttgtgcctgggctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttgtcttgcag
|||||| || ||||| | || ||| |||||  | |||||||| |||||||| ||| ||||||| |||||| || | |||||||  |||||||||||  ||||  | |  |   ||   || ||  |    | |    |   ||  | ||| ||        | |  |  |||||| ||     ||||| || | | |   ||| ||     ||   ||   |||  |   ||  |||||
TCTTCTAGTTTCTGGGAGAAGAAAAGAGGCCCTTCAGTGTGCCCAAGAAGGTCAACTGTGGGGGCCTGCAATTATACTTGCTTTGCAACTTGGTGATAAGgtttgtt--cgacttaatagccttctcttgtttgcatttgaatagtttgcttg--------attttcaatgaggtttt-----cttttcctta-attttttttattt----atcttttctttccccaccggtggtgcag

upper sequence: GLYMA11G03590.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 4
TCTTCTTGTCTCTGGCAAAAAAAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGTGAACAGgtcagatgtcagtttctcaggctgtttaattctctgctgatattttgtgcctgggctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttgtcttgcag
|||||| || ||||| | ||| || |||||| |||| |||||||||||||| || |||||||||||||| |||||||||||| ||||||| ||||| |||||  |   | |  |||| |  ||  || ||  | |  |   |       |  |   ||    |      || ||| ||  | ||  |                                                    
TCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTCTTGCTGCACAACTCGGTGATCAGgtttgtcctga--ttcttaaactcatttatcatttttttccaacaatgactggcagtaatttgcttgggtgtggttttggaatcaatgcag------------------------------------------------

upper sequence: GLYMA11G03590.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0021g02730.t01 (Vitis vinifera), 5'ss of exon 5
TCTTCTTGTCTCTGGCAAAAAAAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGTGAACAGgt-cagatgtcagtttctcaggctgtttaattc--tctgctgatattttgtgcctgggctagac--agtccctttgaggtcttacagtctttt--tctcatact--------gcctttgttgggggatgaatttggtccatatt-tgtcttgcag
 |||||||||||||| | ||||||||||||||||   ||||||  |||||| ||||| |||||||||||||||||||| ||| | ||||||||||| ||||| |  ||   ||  | |     ||||   | |  ||   |   || ||     |||   |  |    ||     ||||  || || || ||   | ||| ||            ||| |   |  |     ||| | | | |  | || |||||
GCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTCTGGCTGCTCAACTTGGTGATCAGgttctcatacaagcatatttaattgttctttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaatt-cattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcag