Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTGTCTCTGGCAAAAAGAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGCGAACAGgtcagatgtcagttttttaggctgtttaattctctgctgatatttcatgccttgaccagacagtccctttgaggtattacagttgttttctcatatggcctttgttgggggttgaatttggtgaatatttggcttgcag

Basic information

species Glycine max
transcript GLYMA11G03580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 4
TCTTCTTGTCTCTGGCAAAAAGAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGCGAACAGgtcagatgtcagttttttaggctgttta--attctctgctgatatttcatgccttgaccagacagtccctttgaggtattacagttgttttctcatatggcctttgttgggggttgaatttggtgaatatttggcttgcag
|||||| || ||||| | |||||| |||||| |||| |||||||||||||| || |||||||||||||| |||||||||||| ||||||| || || |||||  | |     || || |     ||||  ||| | | |  | |    ||| || |  |||  | |  ||| |  ||  |   |   |     ||                                              
TCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTCTTGCTGCACAACTCGGTGATCAGgtttg-tcctgattcttaaactcatttatcatttttttccaaca----atgactgg--cagtaatttgcttgggtgtggttttggaatcaatgcag---------------------------------------------

upper sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0021g02730.t01 (Vitis vinifera), 5'ss of exon 5
TCTTCTTGTCTCTGGCAAAAAGAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTTGGCGAACAGgt-cagatgtcagttttttaggctgtttaattctctgctgatatttcatgccttgaccaga-cagtccctttgaggtattacagttgttttctcatatggc---ctttgttgggggttgaatttggtgaatatttggcttgcag-------------
 |||||||||||||| | ||| ||||||||||||   ||||||  |||||| ||||| |||||||||||||||||||| ||| | |||||||| || ||||| |  ||   ||  | ||    ||||    | ||   |  | |  |||   |  |   |  || |||   |   | |    | ||  || ||   ||| |   | |  ||     ||  ||   |  | | | | | || |               
GCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTCTGGCTGCTCAACTTGGTGATCAGgttctcatacaagcatatttaattgttc---tttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcag