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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattatttaagcttatattatgtttgtcctgcactttatgataaaattattcttgaatactgttacttttcagtagaagccatttaatgggcactctg...

Basic information

species Glycine max
transcript GLYMA11G02540.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328593|gb|GR832965.1|GR832965
EST:     CCACTGATAATCACCAGTTCTACAGATTGTACATGTACCAAATCTCCAAG                         GTTGGTACAGTACTTCTCGGCTGTGCCTTCATTTACGACATCTTTTGGGT
genomic: -CACTGATAATCA-CAGTTCTACAGATTGTACATGTACCAAATCT-CAAGgtaattattt ... cctgaattagGTTGGTACAGTACTTCTCGGCTGTGCCTTCATTTACGACATCTTTTGGGT
EST: gi|254328592|gb|GR832964.1|GR832964
EST:     TTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG                         GTTGGTACAGTACTTCTCGGCTGTGCCTTCATTTACGACATCTTTTGGGTG
genomic: TTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattattt ... cctgaattagGTTGGTACAGTACTTCTCGGCTGTGCCTTCATTTACGACATCTTTTGGGTG
EST: gi|7232562|gb|AW567917.1|AW567917
EST:     TTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG                         GTTGGTACAGTACTT
genomic: TTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattattt ... cctgaattagGTTGGTACAGTACTT