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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcctgctatatatgtatgtaattaattgttggcataaatctcatgacgggcacatatttggtaaaaaccttgtgtag

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 9
TGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcc-------tgctatat--atgtatgtaattaa-ttgttggcataaatctcatgacgggcacatatttggtaaaaaccttgtgtag-------------------
|||||||| || || || || || |||||||||||  | ||||| ||||| ||||| || ||||| ||||||||||||||| |||||||||| ||||||||||||       |||  | |  ||||   | || || |  |   |||| |||| |  || | ||| | |  |   |||     ||||                     
TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctga-aactgtcac-tgtgcgactaaactaaagtgtgaacttcaaaataaactgtag