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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATAACCGCTACCCTAATCTTCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattgtagttgattctgtttggtaacattttccgtttctgcttgctttcattgatgcag

Basic information

species Glycine max
transcript GLYMA10G44440.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 11
CTTTATAACCGCTACCCTAATCTTCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattgtagttgattctgtttggtaacattttccgtttctgcttgctttcattgatg-cag
|||  |  | | | |||||| ||  |||| ||  | ||||| || ||||||||| | ||||  | ||||||| | |||||||||||||||||||||||||||    | |  | |  |   ||||| || | | ||   ||  || ||   ||   |  |  |||| |   |||  |  |||
CTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAGgtaa----atttttgatcatgctgattttaatggtttagattaagtcactaattgtttagccccttgatgcaattcttaacag

upper sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0124g00200.t01 (Vitis vinifera), 5'ss of exon 5
CTTTATAACCGCTACCCTAATCTTCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattgtagttgatt-ctgtttggtaacattttccgtttctgcttgctttcattgatgcag-------------------------------------------------------------------------------------
 | |||  ||| ||||| ||| | ||||| || || |||||| | || |||||| |||||| |||||| ||| ||||||||||||||||||| |||||||||||| |   |  |  |||| |      |    ||  |||    |     | | | |||     || |   |   || |||                                                                                     
TTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAGgtaattgcaaatgataccagttggtccaaggcaagttattgtcctcttttgctgttc-ttttcatgtgttcctaccaattcagtgaataacaattgtagcaaggatttgtatatagattttctattgcctgggacacctaataatggaggtgcttgaacttcatgcag