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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGgtaaaactacatgttccttcactcattcattagttagctgattactagttatctacagtgtatttttttatgatttttaaaaaatgaattatacaataatttgtctgacctttttatattaatttag

Basic information

species Glycine max
transcript GLYMA10G43220.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43220.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 9
GGCAGGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGgtaaaactacatgttccttcactcattcattagttagctgattactagttatctacagtgtatttttttatgatttttaaaaaatgaattatacaataa-tttgtctgacctttttatattaatttag
|| || || ||||| || |||||||||||||||||||||||||| ||   |  |   |      ||||  |  |||||      |  | | || | | ||| | || |   ||| | ||   |   || |     || ||||| |||  | |||   | |      
GGAAGAATACCTTTAATAGGCTGTGGGGGCATTAGCAGgtaaaa-tatcggcacaaccttgtcatcat--gacagctgtgggtcatatgtgtata-tatatatattcaccttttctgaagtcttttttttttttgaactttgtttgatatgtttggttcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283370|gb|BE020931.1|BE020931
EST:     GGCAGGATTCCTTTGATTGGCTGTGGGGGCATTTACCAG                         TGGGGAAGATGCATATAAGAAA
genomic: GGCAGGATTCCTTTGATTGGCTGTGGGGGCATT-AGCAGgtaaaactac ... attaatttagTGGGGAAGATGCATATAAGAAA