1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCAATTATAGAATATATACCCTTATTGGCAAGTCAATTGGGGGTTAGTTTTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctctacacttccttgctagtgtgggtgcattttgggaactgcatattgcacatgacggtttttgttaaccaccttagttattgtag
species | Glycine max |
transcript | GLYMA10G42250.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|208302617|gb|GE099962.1|GE099962
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTGACAACTTGAAEST: gi|151407658|gb|EV277473.1|EV277473
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|17153685|gb|BM143618.1|BM143618
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|14012021|gb|BG726943.1|BG726943
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|254343718|gb|GR857474.1|GR857474
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: GGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|254331030|gb|GR842295.1|GR842295
genomic: GGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|19270079|gb|BM886335.1|BM886335
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|16105352|gb|BI893092.1|BI893092
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGTTGTTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|7926502|gb|AW832528.1|AW832528
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: CTTTCGATGACAAGCTTGGTGCTCTATGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|208055523|gb|GD854618.1|GD854618
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTEST: gi|254343474|gb|GR857230.1|GR857230
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATT
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|254343473|gb|GR857229.1|GR857229
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAEST: gi|17400839|gb|BM177621.1|BM177621
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
EST: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAG GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
genomic: TTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctc ... gttattgtagGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAATTATAGAATATATACCCTTATTGGCAAGTCAATTGGGGGTTAGTTTTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctctacacttccttgctagtgtgggtgcattttgggaactgcatattgcacatgacggtttttgttaaccaccttagttattgtag
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