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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGACAACTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCGGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgactgtaagttattttgattttgatggtttaagcttcattattgacttccattacattttgagtagttctattgaggaagtaaaccctcatctt...

Basic information

species Glycine max
transcript GLYMA10G41940.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 9
TAATGACAACTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCGGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgact---gtaagttattttgattttgatggtttaagcttcattattgacttccattaca-------ttttgagta--gttctattga--ggaagtaaaccctcatctt------------------------------------------------------------------------
 | ||| | ||   | | |     |||||||||||||||||||||||||||  | ||  ||||||| |||||  | | ||| ||||| ||||| || ||||| || |  |   || |    |     |||  ||   ||     || || ||   ||  |  |         | |||| ||  |||||||| |    |  |||    || |                                                                           
AAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGgtatgcggttcttgtcatgcctccacttttctattcctttcatatctttgtttgtttttaagatcccgattctcttgaataaagttctatttactatagttaagagttcctaaagaatcaacacctttgtttttcatagtgggtcttgttttcatgatctctcattacaaacctacatttttacag

upper sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 3
TAATGACAACTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCGGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgactgt------aagttattttgattttgatggtttaagcttcattattgacttccattacattttgagtagttctattgaggaagtaaaccctcatctt
 |||||||| ||    | || || |||| | || |||||||| |||||||||||||| ||||| || |||||  | | ||||||||| ||||| |||||||| ||||| | |       | || ||||  |||| ||  || || | | ||  |  | ||  |  | ||    | || |  | |  | | || |     |      
GAATGACAAGTTCTCCTTTAGCATATACTTGTGCTATTTGGTGTATGCACCACTTTACATTGCTGGGCCAATTGTCAGCTTCAATGCTTTTGCTTCACAGgtctgtgaatttcttttggaattcttttccttttcatttttgaatcattatgttccatttgaagcatatagccaataatagtctgcatgcag-aggttttg-----