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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGATCTTCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttctaattggaattgtttatgccgttttttttccaacaatctattattatatttaatatatttcag

Basic information

species Glycine max
transcript GLYMA10G41920.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 9
AAGGGATCTTCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtat--gtattatgtttc--taattggaatt--gtttatgccgtttt-----ttttccaacaatctattattatatttaatatatttcag
 | |||  || | || |||||| | || ||||| |||||||||||  ||||||| || ||||| ||||||||||||||| | |||||||| ||||| || || |   ||||   ||||  |||||| | ||  |   || ||  ||      ||||  || | | |  |  |||  || || |  | |||
TAAGGAGATTTTAGAGAAACACCTTAAGGCAACCGGTGGAAAAGTGATGACCCGTTTCCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgtttcaatatttgctttcgttaattgtattttcgcacataccacttaaatcatttttgaagattatgcttatatgcttcatcttatgcag

upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 9
AAGGGATCTTCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttctaattggaattgtttatgccgttttttttccaacaatctattattatatttaatatatttcag-------
|| |||  || | || |||||  | |||||||| || ||||||||  ||||||| |||||||| ||||||||||||||| | |||||||| ||||| || || |  || || |||||  ||| |    |||            ||  || |||  ||   |||  |||  ||  ||||        
AAAGGAAATTTTAGAAAAACATCTTAAAGCAACTGGAGGAAAAGTGATGACCCGTTTTCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgttttgataat-tttcttcttgaatgcatttccttgcacaaaattttaa-aattgatatatatgctta-catgcttcatcacacag

upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 8
AAGGGATCTTCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtat---gtattatgtttctaattggaattgtttatgccgttttttttccaacaatctattattatatttaatatatttcag----
|| |||  || | || |||||  | || ||||| || ||||||||  ||||||| |||||||| ||||||||||||||| | |||||||| ||||| || || |   | ||    ||  ||| || |  | |||   |   |||||||    | || | |   |   |  ||  |   |||     
AAAGGAAATTTTGGAAAAACATCTCAAGGCAACTGGAGGAAAAGTGATGACCCGTTTTCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgttttgagaatctccttcataaatgcatgtctttggacacatttttttaattcgatgtgtatatgcttacaagcttcatcacatag

upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
AAGGGATCTTCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttc-taattggaattgtttatgccgttttttttccaacaatctattattatatttaatatatttcag--------------------------------
||||||  | ||||| ||||| |||||||| ||||| || | ||| || |||||||||||||| || || ||||| ||| |||||||||| ||||| || |||   ||||| |||  | ||   |||| |  || |  | | | ||  |  | ||    |||||||  || ||    ||                                 
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatg-aagatgaaccaaaaataatctttaatccaatggcaattttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208315330|gb|GE116150.1|GE116150
EST:     CCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAA                         GCTATGTTTATTGATTTTGGGTTGGCGAAAGACAGGGATGGAGGTTGCTAT
genomic: CCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtatta ... tatatttcagGCTATGTTTATTGATTTTGGGCTGGCGAAAGACAGGGATGGAGGTTGCTAT
EST: gi|208147572|gb|GD945393.1|GD945393
EST:     CCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAA                         GCTATGTTTATTGATTTTGGGTTGGCGAAAGACAGGGATGGAGGTTGCTAT
genomic: CCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtatta ... tatatttcagGCTATGTTTATTGATTTTGGGCTGGCGAAAGACAGGGATGGAGGTTGCTAT