Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGgtagccactcactcatatcaagtattcaagtctcagctattagtttctttatatcattctgcttcaatttttttgactgccactttatcatccttgcag

Basic information

species Glycine max
transcript GLYMA10G38370.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38370.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 9
GTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGgtagccactcactcatatcaagtattcaagtctcagctattagtttctttatatcattctgcttcaatttttttgactgccactttatcatccttgcag
|| |||||| |||| ||||| ||||||||||||  |||||||||||||||| |  |  | ||||||||||| || ||||| || |||||| | | |||   | ||    ||      | | | | |||  ||  |         |     | ||   | ||   |||    || |     | ||||
GTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAGgtaac-aatcatggacatttcatacc----tttaacccattcattcttcagcccttgttgaaataaaacctctttgttgctttcttttttctttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13251720|gb|BG362623.1|BG362623
EST:     GTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG                         AATTTGGTATATGGCTTGGAGAAGTTCATATGAAAATAGTCCCCCTCTTCA
genomic: GTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGgtagccactc ... atccttgcagAATTTGGTATATGGCTTGGAGAAGTTCATATGAAAATAGTCCCCCTCTTCA
EST: gi|23052868|gb|BU577359.1|BU577359
EST:     GTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG                         AATTTGGTATATGGCTTGGAGAAGTTCATATGAAAATAGTCCCCCTCTTCA
genomic: GTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGgtagccactc ... atccttgcagAATTTGGTATATGGCTTGGAGAAGTTCATATGAAAATAGTCCCCCTCTTCA