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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGgttctaatattttctttaaaccttttttttatatatattttgattgcatcttagatctgtgattcagtatcattgctttctgatgattcag

Basic information

species Glycine max
transcript GLYMA10G37730.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
ATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGgttctaatattttctttaaaccttttttt-tatatatattt-tgattgcatcttagatctgtgattcagtatcattgctttctgatgattcag
|| || ||||| || ||||  || ||||||||||||| ||| ||||||||||| ||||||||   ||| |||| | |   | |    || | | |  |||| |||     | ||     | |   | | |    |       || |   ||||
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag

upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S387_39V6.1 (Physcomitrella patens), 5'ss of exon 7
ATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGgt---tctaatattttctttaaaccttttttttatatatattttgattgcatcttagatctgtgattcagtat-cattgctttctgatgattcag--------------------------------------------------------------
||  | |  ||||| | |||   ||| |||||||||| |||||| |||||||||||||||||   |   | ||   |  |   |   |||  | | ||||    |  || |  |    |    |||| | | |   ||||||       || ||                                                               
ATTTCTGCTCAATCTTTTCTCCAGTCTTTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgtaagtgataaatgcacacttggctagtttcatttgtatagaaagcatgtagatgctcttcaagattgattgtattttgcttatcttctatacaattagttttgttgctgttaggacttcctctctaaaagagcttcacatggctctctactggcag

upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
ATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGgt-----tctaatattttctttaa-accttttttttatatatattttgattg----catcttag--atctgtgattcagtatcattgctt---tctgatgattcag-----------------------------------------------------
||  | |  ||||| | |||   ||| |||||||||| ||||||||||||||||||||||||     || ||  | |  || |  |   |   | | || || ||   |       ||||  |    ||||   ||       ||| |||   |    ||||  ||                                                     
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtatgtgtcaaacgtataattgattatgctgactgtttacatcttacaaacatactcatccaaatcgtctgcatttagccggtattacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag