1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAAGCCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatttaaactcaataactctgactttttttaatcattgtgttctactttactgttggtactgaaatgtaattttttttttgtactatatag
species | Glycine max |
transcript | GLYMA10G37210.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACCATACCCGGTGGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAG AACCACATGAGTGAGGTGTTTGCTTACCATGCAACCATGATGTCTAATACCEST: gi|298196130|gb|HO044521.1|HO044521
genomic: CACCATACCCGGT-GGTCAGATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactatatagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
EST: CCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAG AACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACCEST: gi|151410647|gb|EV280462.1|EV280462
genomic: CCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactatatagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
EST: CCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAG AACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACCEST: gi|151411074|gb|EV280885.1|EV280885
genomic: CCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatt ... tactatatagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
EST: ACCATACCCCGGTGGTCAGATGCCACCAAATATTGGGTCAAGTATTCAAG AACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
genomic: ACCATACCC-GGTGGTCAGATGCCACCAAATATTGG-TCAAGTATTCAAGgtttgaaatt ... tactatatagAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATGATGTCTAATACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAAGCCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTCAAGgtttgaaatttaaactcaataactctgactttttttaatcattgtgttctactttactgttggtactgaaatgtaattttttttttgtactatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG