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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCACTTGTTGCAAATTATCCATGGGATGGCAGCGATGACAAAAGgtgataaaatactttatttgtattcattccatgctatttaatttgcattgtgtctactttgctacccattatgtgtgtttcctatatcatatgaaaagtg...

Basic information

species Glycine max
transcript GLYMA10G36590.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 9
GGGGCACTTGTTGCAAATTATCCATGGGATGGCAGCGATGACAAAAGgtgataaaatactttatttgtattcattccatgctatttaatttgcattgtgtctactttgctacccattatgtgtgtttcctatat-catatgaaaagtg----
|| || ||||||||||||||||||||||||||       ||  ||||||| ||     | || ||| ||||  || ||| |  || || |       |   || |||  |    ||| |||   |     | ||   ||  || | |     
GGTGCTCTTGTTGCAAATTATCCATGGGATGGGTCTAGAGATCAAAGgtgtta-----ccttgtttctattatttacattcagttcaagtattccaattattagttttgtgtaaattttgtacatcataaaaatatctagaaacaatctttt

upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 9
GGGGCACTTGTTGCAAATTATCCATGGGATGGCAGCGATGACAAAAGgtgataaaatactttatttgtattcattccatgctatttaatttgcattgtgtctactttgctacccattatgtgtgtttcctatatcatatgaaaagtg-----
|| |||||||||||||||||||||||||||||||   | ||   |||||||  | ||  |  |    |  ||| |   || | | ||| |||   | || || || ||||    ||    |    ||| |  ||  |||    | |      
GGTGCACTTGTTGCAAATTATCCATGGGATGGCACTCAGGATGGAAGgtga--atattttacagacatgatcagttt-tggtttgtaacttgagat-tgcctcctgtgct-ttaatgggattcaattcttccatactattgctatttcatct