1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATGTAAGAAATTTGAAGAAAAAATCACTATGGTCCAAGATTTTGGAAGAGgtaagaacagtgttgcttctatagatttttatgagtggatgcatgaatgtgattattgtaatagaagttgaagttaaatataggattttatttgttttta...
species | Glycine max |
transcript | GLYMA10G36210.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGTAAGAAATTTGAAGAAAAAATCACTATGGTCCAAGATTTTGGAAGAG GTGATGGAAAAGCTTGTAGACATCGTCCATTTTTCTATACTTGGTAGTATTEST: gi|6666544|gb|AW278011.1|AW278011
genomic: ATGTAAGAAATTTGAAGAAAAAATCACTATGGTCCAAGATTTTGGAAGAGgtaagaacag ... gtatctgcagGTGATGGAAAAGCTTGTAGACATCGTCCATTTT-CTATACTTGG-AG-AT-
EST: ATGTAAGAAATTTGAAGAAAAAATCACTATGGTCCAAGATTTTGGAAGAG GTGATGGAAAAGCTTGTAGACATCGTCCATTTTCTATACTTGGAGATACAT
genomic: ATGTAAGAAATTTGAAGAAAAAATCACTATGGTCCAAGATTTTGGAAGAGgtaagaacag ... gtatctgcagGTGATGGAAAAGCTTGTAGACATCGTCCATTTTCTATACTTGGAGATACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATGTAAGAAATTTGAAGAAAAAATCACTATGGTCCAAGATTTTGGAAGAGgtaagaacagtgttgcttctatagatttttatgagtggatgcatgaatgtgattattgtaatagaagttgaagttaaatataggattttatttgttttta
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA